Related Issues (16)
- Switch from cutadapt to trim_galore HOT 1
- bedtools complement reporting chromosome size file has no contents HOT 2
- UCSC compression tools do not work with subcommands HOT 3
- Samples belonging to >2 comparison groups are mishandled HOT 1
- Migrate to using bowtie2 with bismark HOT 1
- paired read HOT 1
- Data sample type HOT 3
- How can I obtain the table of complete annotations described in the README.md file? HOT 2
- Refactor visualization code to use annotatr HOT 2
- Develop a test suite HOT 4
- Make arguments for trim_galore parameters
- Make argument for cutoff parameter in methylation extractor
- Clarify 0-based and 1-based files
- Fix bigWig creation of pulldown coverage
- Compress output files where possible HOT 1
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