Sanjay Curtis Nagi's Projects
A state-of-the-art snakemake workflow for amplicon sequencing
Detecting IBD within low coverage ancient DNA data. Development Repository for software package that contains code for manuscript.
Anopheles gene expression in insecticide resistance studies
Lecture notes for a course on genomic surveillance of malaria vectors, developed by PAMCA and MalariaGEN
Primer Design in Anopheles gambiae and funestus considering genetic variation
⚡ Automating scientific workflows with AI ⚡
Code for the coeaexf manuscript
A python package for determining inversion genotype in Anopheles coluzzii and gambiae
Attempting to impute and phase low coverage sequencing data in Anopheles
A Python package providing functions for accessing and analysing MalariaGEN data.
Repo for analyses of effective population size of Anopheles gambiae
My personal website - built with React, React-Router, React-Snap for Static-Export, and GitHub Pages.
Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)
Jupyter notebooks for thesis analyses not contained in other repositories/workflows
Repo for analyses into Ag1000g with Relate
Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
Personal website and blog
Personal website and blog, based on amanhimself.dev 🙏
A Python package for exploring and analysing genetic variation data
Statistical genetics toolkit
Snakemake-GUI is a graphical user interface (GUI) that can be used to run Snakemake workflows. It is essentially sequanix, without the sequana pipelines.
This is the development home of the Snakemake wrapper repository, see