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Hello there 👋

I'm Sanjay Curtis Nagi, a researcher studying the major malaria mosquito Anopheles gambiae 🦟

Sanjay Curtis Nagi's Projects

ampseeker icon ampseeker

A state-of-the-art snakemake workflow for amplicon sequencing

ancibd icon ancibd

Detecting IBD within low coverage ancient DNA data. Development Repository for software package that contains code for manuscript.

anoexpress icon anoexpress

Anopheles gene expression in insecticide resistance studies

anoprimer icon anoprimer

Primer Design in Anopheles gambiae and funestus considering genetic variation

compkaryo icon compkaryo

A python package for determining inversion genotype in Anopheles coluzzii and gambiae

impute-ag icon impute-ag

Attempting to impute and phase low coverage sequencing data in Anopheles

ne_ag icon ne_ag

Repo for analyses of effective population size of Anopheles gambiae

personal-site icon personal-site

My personal website - built with React, React-Router, React-Snap for Static-Export, and GitHub Pages.

phasedibd icon phasedibd

Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)

phd_thesis_code icon phd_thesis_code

Jupyter notebooks for thesis analyses not contained in other repositories/workflows

rna-seq-pop icon rna-seq-pop

Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data

scikit-allel icon scikit-allel

A Python package for exploring and analysing genetic variation data

sgkit icon sgkit

Statistical genetics toolkit

snakemake-gui icon snakemake-gui

Snakemake-GUI is a graphical user interface (GUI) that can be used to run Snakemake workflows. It is essentially sequanix, without the sequana pipelines.

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