Comments (1)
Iād like to use this tool for the same reason, but Iām scare that if the tool calls the SNPs using internal pseudo reference genome (I think the consensus sequence), it makes little sense. e.g. For the GISAID msa file, where the variant D614G is present in almost all sequences, it will be recognised as WT and not as variant.
from snp-sites.
Related Issues (20)
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from snp-sites.