Coder Social home page Coder Social logo

Comments (8)

martinghunt avatar martinghunt commented on July 20, 2024

Could you share the input reads with me please so I can try to debug? Thanks.

from iva.

lmoncla avatar lmoncla commented on July 20, 2024

from iva.

martinghunt avatar martinghunt commented on July 20, 2024

Thanks. What version of IVA did you use and what was the command to run it?

from iva.

lmoncla avatar lmoncla commented on July 20, 2024

from iva.

martinghunt avatar martinghunt commented on July 20, 2024

I don't yet know why you didn't get the error with a single thread, but the reason for the error is that there needs to be the same number of reads in the two files. And the N^th read in each file should be mate pairs.

$ wc -l *
  1989088 6390_S23_L001_R1_001.trimmed.fastq
  1657760 6390_S23_L001_R2_001.trimmed.fastq

If you trim with trimmomatic, then you'll need to only keep the paired reads. Throw away everything else, ie when one read of a pair is removed by trimmomatic.

from iva.

lmoncla avatar lmoncla commented on July 20, 2024

from iva.

martinghunt avatar martinghunt commented on July 20, 2024

No, sorry but the read pair information is essential to its algorithm.

from iva.

lmoncla avatar lmoncla commented on July 20, 2024

from iva.

Related Issues (20)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.