samuell Goto Github PK

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

beam

A distributed knowledge graph store

bigdatalog

bioclipse.blipkit

Integration of BLIPKIT

bioclipse.core

Bioclipse2 Core.

bioclipse.docpublish

Eclipse Plug-In with Ant Tasks for publishing developer documentation as Eclipse help files as well as to MediaWiki

bioclipse.igv

Integration of the Integrative Genomics Viewer (IGV) in Bioclipse

bioclipse.rdf

Bioclipse2 RDF.

bioclipse.smw

Semantic MediaWiki connector for Bioclipse

bioclipse.social

Bioclipse Social - Linking Bioclipse to the Social Web.

bioclipse.swipl

Integration of SWI-Prolog into Bioclipse

bioinformatics-workflows

minimal example implementations for bioinformatics workflow managers

biological_id_conversion

Collection of scripts for doing ID conversions of Biological stuff like Gene IDs etc.

biomake

GNU-Make-like utility for managing builds and complex workflows

blade

A task runner designed for flexibility and easy install. Tasks are defined in Lua and a purpose built API is exposed. No additional dependencies are needed then the blade binary.

blog

Some notes on things I find interesting and important.

blow

Flow-based Bioinformatics library written in Go

book

Compiled and pretty version of labs (updated with a bit of lag)

brightstardb

This is the core development repository for BrightstarDB.

bufchan_test

Testing strange behaviour of buffered channels in Go

bufchan_tests_2013

bugs

Bug reproductions

caire

Content aware image resize library

calysto_prolog

A Prolog kernel for Jupyter

can-go

CAN toolkit for Go programmers

cannyfs

A shim file system giving excellent throughput by assuming all I/O operations CAN complete successfully.

caw

Cancer Analysis Workflow prototype

caw-testwf

cde

CDE: Code, Data, and Environment packaging for Linux

cell-compiler

Cell compiler