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approxbayes.jl

Approximate Bayesian Computation (ABC) algorithms for likelihood free inference in julia

btv-european-reproductive-ratios

MATLAB® code for creating daily reproductive ratios for BTV across Europe.

climatic-reproductive-ratio-vbd

Code for introducing climate time series into climatic R calculations.

covid-19-in-households-public

covid-policy-tracker

Systematic dataset of Covid-19 policy, from Oxford University

covideventdistributions

ebola_mcmc

Direct MCMC methods for Ebola

epi-examples-julia

Epi model examples in Julia

flusight-forecast-hub

fun-games

A repo for playing around with game development

gpabc.jl

A fork of GpABC to try improving compatibility

householdandagersvmodel

Julia 0.6 code for running the household and age RSV model

kenya-covid-three-waves

Model supporting "COVID-19 Transmission Dynamics Underlying Epidemic Waves in Kenya"

kenyacov

This repo contains the source code KenyaCoV, a simulation package for forecasting SARS-CoV-2 transmission in Kenya.

kenyacovaccines

Vaccine modelling

monkeypoxuk

Some code for monkeypox

mpoxuk

Modelling Mpox transmission in the United Kingdom.

mpxinc_2022

Incubation period for mokeypox

msml21_bayesiannode

reproductiveratiovbd

Reproductive ratio

rsv-transmission-model

Transmission model to evaluate the impact of RSV in England

rsv_serology

rsvhouseholdmodel

Julia 0.6 code for running the RSV Household transmission model (see https://www.biorxiv.org/content/10.1101/569335v1.abstract for preprint).

sampling_rt_vs_rt

Sampling growth rates vs Rt

statespacemodels.jl

StateSpaceModels.jl is a Julia package for time-series analysis using state-space models.

uk-btv-model

C++ code to run a model simulating BTV spread between farms using climate data from 2007.

universal_differential_equations

Repository for the Universal Differential Equations for Scientific Machine Learning paper, describing a computational basis for high performance SciML