Name: Samuel Brand
Type: User
Company: Centre for Forecasting and Outbreak Analytics (CDC/CFA)
Bio: A contracted analyst for CFA/CDC.
Formerly a PDRA at Zeeman Institute for Systems Biology and Infectious Disease Epidemiological Research (SBIDER).
Location: London, United Kingdom
Samuel Brand's Projects
Approximate Bayesian Computation (ABC) algorithms for likelihood free inference in julia
MATLAB® code for creating daily reproductive ratios for BTV across Europe.
Code for introducing climate time series into climatic R calculations.
Systematic dataset of Covid-19 policy, from Oxford University
Direct MCMC methods for Ebola
Epi model examples in Julia
A repo for playing around with game development
A fork of GpABC to try improving compatibility
Julia 0.6 code for running the household and age RSV model
Model supporting "COVID-19 Transmission Dynamics Underlying Epidemic Waves in Kenya"
This repo contains the source code KenyaCoV, a simulation package for forecasting SARS-CoV-2 transmission in Kenya.
Vaccine modelling
Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Illinois, 2024", MMWR (2024)
Some code for monkeypox
Modelling Mpox transmission in the United Kingdom.
Incubation period for mokeypox
Reproductive ratio
Resources mostly related to statistics, computing in R, and research processes
Transmission model to evaluate the impact of RSV in England
Julia 0.6 code for running the RSV Household transmission model (see https://www.biorxiv.org/content/10.1101/569335v1.abstract for preprint).
Sampling growth rates vs Rt
StateSpaceModels.jl is a Julia package for time-series analysis using state-space models.
C++ code to run a model simulating BTV spread between farms using climate data from 2007.
Repository for the Universal Differential Equations for Scientific Machine Learning paper, describing a computational basis for high performance SciML