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Stephen Rudd's Projects

amos icon amos

A clone of the official AMOS git repo on sourceforge: https://sourceforge.net/projects/amos/

epi4you icon epi4you

Some data wrangling for the EPI2ME desktop environment

fastcat icon fastcat

Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.

flounder icon flounder

a collection of R-based tools for the exploration and analysis of nanopore sequence data

nanopore icon nanopore

R package including accessory methods for analysis of Nanopore data

packyak icon packyak

Code for preparing RPMs from requested R packages

pawchop icon pawchop

Like porechop but implemented in rust - not an official project, yet

pipeline-transcriptome-de icon pipeline-transcriptome-de

Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads

rampart icon rampart

Read Assignment, Mapping, and Phylogenetic Analysis in Real Time

rampart_docker icon rampart_docker

build content for the https://hub.docker.com/r/ontresearch/artic_rampart containers

rtqc icon rtqc

a toy application for real-time QC of DNA sequence data

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