Related Issues (20)
- Identifying bonafide ligand-receptor pairs in the updated ligand-receptor database (V2)
- SeuratV5 HOT 4
- Error finding log fold change information of ligands from sender cells (Seurat V5 object) HOT 6
- How exactly the ligand activity were calculate? HOT 1
- I cannot run the "get_weighted_ligand_receptor_links" and "prepare_ligand_receptor_visualization" while I have nichnetr installed HOT 2
- Preferable metric to infer cell-to-cell communication HOT 1
- what is ligand_tf_matrix for?? HOT 1
- `get_exprs_avg` changes underscore to hyphen in cell type names
- How to choose the best ligand to continue analysis with the potential ligand?
- How should I assign a pathway/pathways to the target genes when running nichenetr? HOT 3
- cannot complete assign_ligands_to_celltype HOT 2
- missing function for circos plot visualization HOT 2
- I can't install nichenet HOT 1
- Condition_colname is not used for subsetting in nichenet_seuratobj_aggregate HOT 2
- `make_line_plot` bugs
- `assign_ligands_to_celltype` bug when there are no general ligands
- Error in `generate_info_tables`
- Warning message in `predict_ligand_activities`
- `generate_prioritization_tables` warnings and documentation
- Error when passing the recorrect_umi argument in get_lfc_celltype HOT 1
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