Comments (7)
@csangara thank you for getting back to me. I had some other dependency issue but after fixing that all working now.
from nichenetr.
Could you try following the step-by-step analysis instead and see if you can run the vignette?
https://github.com/saeyslab/nichenetr/blob/master/vignettes/seurat_steps.md
In the meantime I'll try to fix the issue in the coming weeks.
from nichenetr.
I have this same issue, any update?
from nichenetr.
I followed the classical pipeline and it worked as always(as suggested by @csangara), so you can try with that.
from nichenetr.
I've implemented a fix for the wrapper functions now. Please update to v2.0.6 and let me know if there would be any issues. Note that the alias conversion function will not longer work for v5 objects.
from nichenetr.
Hey! I have the same issue on V5 Seurat object with nichenetr V2.0.6 version. It seems like you have fixed this two weeks ago but not sure why I am still getting error. Any help much appreciated!
from nichenetr.
@avpatel18 Is it the same error as above? Could you also provide your sessionInfo()
?
from nichenetr.
Related Issues (20)
- Error in `generate_info_tables`
- Warning message in `predict_ligand_activities`
- `generate_prioritization_tables` warnings and documentation
- Error when passing the recorrect_umi argument in get_lfc_celltype HOT 1
- Error in WhichCells.Seurat(object = object, idents = ident.2) : Cannot find the following identities in the object: Adjacent HOT 1
- Error in `Idents<-`: ! 'value' must be a factor or vector HOT 3
- Different results running. the same. code in different version. of HOT 6
- Protein complex HOT 1
- Function generate_info_tables return an error HOT 3
- Low AUPR values in analyses HOT 4
- RankActiveLigands Error
- Can NicheNet be used for analyzing three groups? HOT 1
- Parallelization error when optimizing parameters for NicheNet HOT 4
- How is the Ligand-Target-Matrix generated? HOT 2
- Receiver cells in differential analysis HOT 1
- when sender cell type is only one, HOT 1
- Only activating interactions or also repressing? HOT 1
- Naming convention in prioritization table
- Change error in `alias_to_symbol_seurat()` to warning
- discrepancy in results output HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from nichenetr.