sachiwije Goto Github PK

afl_fitzroy

cpp-527-spr-2020

Course shell for CPP 527 Foundations of Data Science II for Spring 2020.

dge_workshop_salmon_online

docker

ev1_selectionmetaanalysis

Vignette and research project developed under the AES ERC Networking Grant Scheme and the GSA workshop support scheme.

installing_windows

Documenting how I installed windows and removed linux

instrain

Bioinformatics program inStrain

intro-to-bioinfo

COMBINE Australia Introduction to bioinformatics workshop

kraken2

The second version of the Kraken taxonomic sequence classification system

metagenomics

Metagenomica

metagenomics_summer_school

Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in December

mu_human_genomic_analysis

Orignal: Genomic analysis of mosquito, possum and human derived M. ulcerans genomes

nextflow-nf-core-practise-

probe_finder

This is to design probes (minimalist approach) for Plasmodium falciparum to be used in Probe Capture Enrichment before Next Generation Sequencing.

pycalcu

A simple string based calculator

rna-seq-workshop

scrna-tools

Table of software for the analysis of single-cell RNA-seq data.

sm-sniper

A snakemake pipeline that performs variant calling of Nanopore reads from FastQ files for non-model organisms

swga

Select primer sets for selective whole genome amplification (SWGA)

tidytuesday

trackplot

Generate IGV style locus tracks from bigWig files in R