Comments (3)
After discussion, we like the idea of JSON. David also needs to graduate however, and a ton of validation work and writing needs to be done to make that happen. So currently the plan is to tentatively try and get JSON support working as a ~2-3 day investment, then to make a decision based on the outcome of that testing.
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JSON stats are looking GOOD! Can't wait to make a nice R visual from it, we all need to finalize however the terminology. Closing for now however
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Related Issues (20)
- Feature downgrade actually, remove -a option from SuperD
- -m (minLength) option removed from hts_QWindowTrim, but does not exist in hts_CutTrim HOT 3
- Flag use HOT 1
- Is "percentage-hits" calculated properly for SeqScreener? HOT 1
- SuperDeduper ignoring reads HOT 6
- hts_Primers doesn't seem to read multi-fasta files correctly
- hts_Primers - error message HOT 4
- Version incorrect and CMAKE_PREFIX_PATH not working HOT 5
- How to cite HTStream? :-) HOT 2
- hts_LengthFilter is missing from the documentation!
- citation? HOT 2
- Add to CutTrim, trim to length from 5' or 3'
- pointer error in hts_Stats HOT 1
- Compiling from source fails on Ubuntu 22.04.1 HOT 2
- Remaining adapter sequence
- Order of input files to hts_SeqScreener changes hits reported when R1/R2 lengths differ
- "no such file or directory" error HOT 2
- munmap_chunk(): invalid pointer error HOT 3
- Issue in Common: Memory Leak in `check_open_r` (not closing file) HOT 2
- Mac version available on github, via Brew, and on bioconda is outdated
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