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This repository contains the code for all of my algorithms assignments
Analysis of gene expression data from mus musculus
Here I will be using bash scripting to get SRR runs and use sra-toolkit to generate fastq files, which will then be used in STAR-aligner to align to a human reference genome. Also will try to incorporate DESeq2 analysis.
This repository contains the methods I use to analyze Inflammatory Bowel Disease (IBD) microbiota data. Specifically Chron's disease vs non-IBD patient biota data.
Here I create a nextflow pipeline that takes pair end reads and outputs a coordinate sorted bam and bai file
Making an R shiny app that analyzes RNA-seq data and produces visualizations
The files for running my RNA-seq nextflow pipeline
This is a nextflow pipeline for analyzing PE50 reads from Cut&Run data also bulk RNA seq data
use a directory of pe reads for this pipeline to analyze cut&run data
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.