Comments (3)
Hi Elif, thanks for your interest in our work. We were using Python 3.8.0 - can you install the packages using this version? If not, it would be nice if you could show the compatibility error.
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Thanks for your quick response. I'm currently facing an issue while installing the required packages. Here's the error I encountered:
Using cached torch-1.8.0-cp38-cp38-manylinux1_x86_64.whl (735.5 MB)
Collecting torch-scatter==2.0.9 (from -r requirements.txt (line 23))
Using cached torch_scatter-2.0.9.tar.gz (21 kB)
Preparing metadata (setup.py) ... error
error: subprocess-exited-with-error
× python setup.py egg_info did not run successfully.
│ exit code: 1
╰─> [6 lines of output]
Traceback (most recent call last):
File "<string>", line 2, in <module>
File "<pip-setuptools-caller>", line 34, in <module>
File "/tmp/pip-install-i5657kpa/torch-scatter_035b5d25850b4a7eab3221ea047703d4/setup.py", line 8, in <module>
import torch
ModuleNotFoundError: No module named 'torch'
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed
× Encountered error while generating package metadata.
╰─> See above for output.
note: This is an issue with the package mentioned above, not pip.
hint: See above for details.
WARNING: There was an error checking the latest version of pip.
How can I resolve this issue? I haven't found a solution yet. Could it possibly be related to the CUDA version?
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I see... Yes, this might be related to the CUDA version. In the past, I've also run into installation issues with torch-scatter. Perhaps you could try manually installing Pytorch first followed by torch-scatter?
According to the torch-scatter documentation, if pytorch >= 1.8.0 is installed then you should be able to install torch-scatter as conda install pytorch-scatter -c pyg
(or if you are using pip: pip install torch-scatter -f https://data.pyg.org/whl/torch-1.8.0+${CUDA}.html
)
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Related Issues (6)
- The difference between testing dataset and validation dataset HOT 1
- AssertionError when running "assert np.allclose(y_test_, y_test)" HOT 2
- Questions about the normalized RNA-seq data processing HOT 2
- Clarification on the Selection of Target Tissues in the Training Script HOT 3
- Handling data with high zero count per gene
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