Comments (3)
Hi,
Thank you for reporting this!
First of all, it has no effects on the results.
It looks like pandas and xgboost have changed arguments for some of their functions, so I will fix this for the next version of cctyper, but you can simply ignore it.
It would be helpful if you could tell me what version of cctyper, pandas, and xgboost/py-xgboost you have installed in your conda environment.
- Jakob
from crisprcastyper.
Thank you so much.
cctyper v.1.4.4, pandas v1.3.0, py-xgboost v.1.4.0, python v3.9
I hope this information will help you.
from crisprcastyper.
This is now fixed in version 1.5.0
from crisprcastyper.
Related Issues (20)
- A complement to CRISRPRCasFinder or its own thing? HOT 1
- Execution against protein fasta and gff HOT 2
- Different results from CRISPR Cas typer web server and standalone version HOT 5
- Error when running cctyper: sed: cannot rename <output filename>/sed78a7GM: Permission denied HOT 2
- ![image](https://user-images.githubusercontent.com/121949837/212599561-d771b233-4bde-4850-8e5f-98a4164f78cb.png)
- Option to use Prodigal-gv
- Meaning of asterisk at the end of protein sequence HOT 1
- Creating empty files when there's no data HOT 1
- castyping.py having an issue with positional arguments. HOT 2
- CCTyper results HOT 4
- Orphan CRISPR definition HOT 2
- (Question) provide GFF file for pre computed gene calls? HOT 5
- XGBoost model incompatible HOT 8
- If minced detects a CRISPR with N's in the repeat sequence
- (Question) How can I plot svg post-hoc after a run? HOT 1
- ValueError: invalid literal for int() with base 10: 'lengt' HOT 2
- access to sequences that used to geenrate Cas profiles
- access to sequences that used to geenrate Cas profiles HOT 1
- error while loading shared libraries: libnsl.so.1
- Source for repeats.fa
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