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Hi! 👋

  • 💁‍♀️ My name is Emma (she/her) and I'm interested in all things bioinformatics and computational biology!
  • 👩‍💻 I am currently working as a PhD student at IMBA Vienna on better understanding the 3D structure of genomes. This involves
    • 🧫 data analysis of Hi-C and Micro-C experiments
    • 🖥 running and analyzing polymer simulations and
    • 🧬 developing new tools and acquiring new technical skills and biological knowledge for these purposes.
  • Reach out to me via 📧 email or find me on 🐘 Mastodon or LinkedIn LinkedIn.

Technologies and tools I work with or am interested in and learning

Python  C++  C#  Rust  R  Java  JavaScript  React  CSS  HTML  MySQL  NodeJS 

Emma Rusch's Projects

hic icon hic

CLI tools and notebooks for downstream analysis of Hi-C data such as creating scaling plots or calculating insulation scores.

piqmee icon piqmee

repository for code and releases of PIQMEE add-on for BEAST2

polychrom icon polychrom

Polymer simulations of chromosomes and generating "in silico" Hi-C maps

polychrom-workflow icon polychrom-workflow

A Snakemake workflow for running and analysing polymer simulations using Polychrom.

wiggin_yeast icon wiggin_yeast

A collection of wiggin actions for simulations of budding yeast chromosomes

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