ruixli Goto Github PK

affinewarp

An implementation of piecewise linear time warping for multi-dimensional time series alignment

allenccf

Tools to work with Allen Inst CCF data in matlab

amasine

autorm

an automatic toolkit for mouse retinotopic mapping

brainspace

BrainSpace is an open-access toolbox that allows for the identification and analysis of gradients from neuroimaging and connectomics datasets | available in both Python and Matlab |

caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

caiman-matlab

Complete Matlab pipeline for large scale calcium imaging data analysis

deepaction

Toolbox for classification of animal behavior in video

deepcad-rt

DeepCAD-RT: Real-time denoising of fluorescence time-lapse imaging using deep self-supervised learning

dsmap

MATLAB functions to analysis direction and orientation selectivity

export_fig

A MATLAB toolbox for exporting publication quality figures

facemap

Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

facemov

extract animal movement using svd decomposition

matlab-schemer

Apply and save color schemes in MATLAB with ease.

matlab_elastix

MATLAB Elastix wrapper

mouse_woi

Mouse wide-field optical imaging processing toolbox

normcorre

Matlab routines for online non-rigid motion correction of calcium imaging data

npy-matlab

Experimental code to read/write NumPy .NPY files in MATLAB

nrrd-matlab

MATLAB code to read and write nrrd file

pytorch-unet

PyTorch implementation of the U-Net for image semantic segmentation with high quality images

rastermap

a visualization method for neural data

retinotopic_mapping

visual display and analysis python code for retinotopic mapping of rodent visual cortex

scicolormap

MATLAB colormaps for scientific data representation

starburst

Open source eye tracking algorithm

suite2p

cell detection in calcium imaging recordings

suite2p-matlab

Tools for processing 2P recordings

tif-matlab

A wrapper packge to read and write multi-page tif or tiff files with MATLAB.

wfield

Tools to process widefield data

widefieldimager

Pre-processing pipeline for widefield data

yaml-matlab

MATLAB YAML parser and emitter based on SnakeYAML