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alphafold

Open source code for AlphaFold.

clara-train-examples

Example notebooks demonstrating how to use Clara Train to build Medical Imaging Deep Learning models

dna-transformer

evodictor

Evodictor is a software package for learning patterns and predicting the future of evolution by gain/losses of given traits

evodictor_experiment

github-slideshow

A robot powered training repository :robot:

glom-pytorch

An attempt at the implementation of Glom, Geoffrey Hinton's new idea that integrates concepts from neural fields, top-down-bottom-up processing, and attention (consensus between columns), for emergent part-whole heirarchies from data

gsm_msystems_2021

"Genome-scale metabolic models and machine learning reveal genetic determinants of antibiotic resistance in Escherichia coli and unravel the underlying metabolic adaptation mechanisms." by Nicole Pearcy, Daniel Lea, Ning Xue, Yue Hu, Michelle Baker, Alexandre Guerra, Wei Wang, Jasmeet Kaler, Zixin Peng, Fengqin Li, and Tania Dottorini

kineticlearning

Learning Kinetic Models from Time Series Proteomics and Metabolomics Data

mlp-sae

pytorch-original-transformer

My implementation of the original transformer model (Vaswani et al.). I've additionally included the playground.py file for visualizing otherwise seemingly hard concepts. Currently included IWSLT pretrained models.

rnn-music-recommender

sequential content-based recommendation system