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bioc-refcard

Bioconductor cheat sheet

blogsite

fluidscqpcr

R package to pre-process, analyze and visualize single-cell qPCR data

getrackviz2

giotto

Spatial omics analysis toolbox

giotto_readthedocs

giotto_site

Website for the Giotto spatial toolbox

giotto_site_dev

Giotto documentation for development version

giottoclass

giottodata

Spatial datasets and helper functions to test and work with Giotto Suite

giottoutils

giottovisuals

long-rna-seq-pipeline

STAR based ENCODE Long RNA-Seq processing pipeline

nch_coder_upgrade

rescue

Bootstrap imputation for scRNAseq data

rfast

A collection of Rfast functions for data analysis. Note 1: The vast majority of the functions accept matrices only, not data.frames. Note 2: Do not have matrices or vectors with have missing data (i.e NAs). We do no check about them and C++ internally transforms them into zeros (0), so you may get wrong results. Note 3: In general, make sure you give the correct input, in order to get the correct output. We do no checks and this is one of the many reasons we are fast.

rnaseq_pipeline

An easy and simple RNAseq pipeline for the first step of processing raw fastq files.

spatialexperiment-analysis

repo to explore spatial data in R/Bioconductor and Python

vitesscer

R API and htmlwidget for Vitessce

whitepaper

Manubot for white paper