rstatistics Goto Github PK

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alevin-tutorial

This is a support website for Alevin-tool (part of Salmon).

aml-crnde-analysis

Oncogenic role of lncRNA CRNDE in acute promyelocytic leukemia and NPM1-mutant acute myeloid leukemia

appris

Annotating principal splice isoforms

audicmethod

RNAseq analysis without replicate

awosome-bioinformatics

A curated list of resources for learning bioinformatics.

ballgown_code

analysis code used in Ballgown paper

bbmap

(Not Offical) BBMap short read aligner, and other bioinformatic tools.

beer

BEER: Batch EffEct Remover for single-cell data

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics-environment

Describe the environment used for bioinformatics

blast4go

A fast and light-weighted bioinformatics pipeline for high-quality protein function prediction and functional analysis of genomic datasets

blast4ko

A fast and light-weighted bioinformatics pipeline for protein function prediction and pathway analysis (KEGG pipeline)

cb_sniffer

mutation(barcode) caller for 10x single cell data

cci

celescope

CeleScope

celescope-1

GEXSCOPE Single Cell Analysis Tool Kit

cell-type-deconvolution

cellchat

R toolkit for inference and analysis of cell-cell communication from single-cell data

cellphonedb

chip-seq-pipeline

ENCODE Uniform processing pipeline for ChIP-seq

chip-seq-pipeline2

cibersort

comparative-annotation-toolkit

conics

CONICS: COpy-Number analysis In single-Cell RNA-Sequencing

contributions

Contribute Packages to Bioconductor

counts2tpm

counts to tpm/fpkm

covid_balf

R script for the covid balf data analysis

crossscc

An Single-Cell Clustering analysis framework Crossing batches of data

csama

Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology