Name: Robert A. Petit III
Type: User
Company: Wyoming Public Health Laboratory
Bio: Bioinformatician at the Wyoming Public Health Laboratory. Developer of the Bactopia and other microbial genomic tools.
Twitter: rpetit3
Location: Cheyenne, WY
Hello, I'm Robert Petit (puh-teet, not pet-it)! I currently work as a bioinformatician in the Wyoming Public Health Laboratory. In my personal time I am continuing to develop Bactopia, a bacterial genome analysis pipeline.
addons
Unofficial Windower Addons
admin
basic scripts for server administration
admixtools
Tools test whether admixture occurred and more
advent-of-code
Source for adventofcode.com challenge
agrvate
Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.
anthrax-metagenome-study
Bacillus anthracis identification in metagenomic sequencing.
any2tsv
Convert various bioinformatic outputs to TSV
aquascope
ariba
Antimicrobial Resistance Identification By Assembly
assembly-scan
Generate basic stats for an assembly.
awesome-bioinformatics
A curated list of awesome Bioinformatics libraries and software.
awesome-nextflow
A curated list of nextflow based pipelines
bactopia
A flexible pipeline for complete analysis of bacterial genomes
bactopia-ap
bash_functions
Functions I keep in my .bash files. Usually written badly by myself (to handle only very specific cases) or also possibly stolen off the internetz
bigsi
BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data
binf-compare
A comparison of bioinformatic tools (qc, assembly, variant, etc...) for bacterial genomics.
binf-scripts
Personal bioinformatic related scripts that need a home.
bio-easel
Perl modules and scripts for interfacing with Sean Eddy's C easel sequence analysis library using Perl's Inline.
bioconda-containers
Container images for usage inside of Bioconda
bioconda-recipes
Conda recipes for the bioconda channel.
bioconda-utils
Utilities for building and managing bioconda recipes
bowtie2
A fast and sensitive gapped read aligner
c-wap
SC2 variant detection and composition pipeline
call_variants
A ruffus pipeline to call variants following GATK best practices.
camlhmp
🐪Classification through yAML Heuristic Mapping Protocol 🐪
cgc-utils
A set of scripts used for interfacing with the Cancer Genomics Cloud platform.
clinker
Gene cluster comparison figure generator
clonalsnps
Python functions to find clonal divergence of S.aureus strains
configs
Config files used to define parameters specific to compute environments at different Institutions
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ❤️ Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
