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agri-schemas

Development of schemas and ontologies for the agrifood, inspired to schema.org and bioschemas.

annotation

bioknet-onto

The Bio Knowledge Network, powering knowledge graphs released by the Knetminer project

cbs-dispersal-model

A landscape-scale model of Cassava Brown Streak dispersal within and between growers’ fields, and the response of growers to the disease through a behavioural model of clean seed use.

cbsdispersalmodel

A landscape-scale model of Cassava Brown Streak dispersal within and between growers’ fields, and the response of growers to the disease through a behavioural model of clean seed use.

covid19-kg

Documentation for the COVID-19 KnetGraph SPARQL and Cypher endpoints

docker-tomcat

A basic tomcat docker image based on OpenJDK

easybuild-easyconfigs

A collection of easyconfig files that describe which software to build using which build options with EasyBuild.

fculmorum-kg

Fusarium culmorum KG ETLs for public access

genelist-api

KnetMiner API query tool for list of genes

genomaps.js

Interactive visualization of highdensity SNP, QTL, GWAS and gene data.

graphdb-benchmarks

Application to benchmark Neo4j+Cypher/Virtuoso+SPARQL/ArcadeDB+Gremlin querying

graphql-api

KnetMiner Platform API BETA

kgraph-usecases

A test project to develop Knetminer use cases about using raw data endpoints.

knetbuilder

KnetBuilder data integration platform for building knowledge graphs. Previously known as ondex.

knetgraphs-gene-traits

Enrichment Analysis Use Cases. Tools to analyse plant biology knowledge graphs and find significant traits and bioprocess from gene expression sets. The project uses data from Knetminer, ENSEMBL, EBI Gene Expression Atlas and others, exported as Knowledge graphs using Agrischemas/Bioschemas annotations.

knetmaps.js

KnetMaps: a BioJS component to visualize biological knowledge networks

knetminer

KnetMiner - webapp to search and visualize genome-scale knowledge graphs

knetminer-backend

The new Knetminer backend, based on graph databases.

knetminer-backend-doc

Documentation, demos, presentations, etc for the Knetminer Data Backend.

knetminer-common

Parent POM for Knetminer projects, also containing common files.

knetminer-common-util

KnetMiner data download scripts, workflows and workflow console scripts

knetminer-lightgraph

Low RAM Knowledge Graphs for Knetminer

knetminer-lodestar

Knetminer-customised version of LODEStar

knetminer-testing

Material about testing knetminer

knetminer-website

KnetMiner website

lesson-template

Template for remixable lessons.

neo4j-server-maven-plugin

Start and stop any version of Neo4j community server

ondex

The ONDEX codebase. This was migrated from https://sourceforge.net/p/ondex/code Edit

ondex-base

Basic ONDEX components.