Comments (3)
from rfdesign.
I emailed your uw email with all the files, let me know if you didn't get it.
In short, the command I ran was:
python ~/Thesis/RFDesign/hallucination/hallucinate.py
--pdb=$folder_with_pdb
--mask=2-10,A1-8,2-10
--out="$output_dir/TRIB1"
--num=100
--steps=g400
I re-ran the job with "--mask=20-40,A1-8,20-40 " and interestingly it is working now. Perhaps it has to do with the length of the hallucinated protein?
from rfdesign.
Quick update:
Using various pdbs and trying different command parameters I have found that attempting to hallucinate a protein less than 26 amino acids in length gives me the aforementioned error. It does not have to do with the number of gradient steps, solely with the length (can anyone else try running a job with a desired protein length of less than 26 to corroborate?)
Hope this helps,
Philipp
from rfdesign.
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