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Name: Roger.Cardiac
Type: User
Name: Roger.Cardiac
Type: User
Affymetrix microarrays of different technology versions are very often used in transcriptomics analysis. Quality control and normalization approaches do exist, especially as packages in Bioconductor/R. However: -Procedures are often different between teams. -They are not always easy to access as they run through command lines. -It is often not clear what the meaning of the specific settings and results are -They are not always usable for the newer technology types of arrays. To tackle this, we proposed an automated well-documented and user-friendly pipeline for Affymetrix microarray quality control and normalization.
Microarray analysis of agilent data
《R语言数据可视化之美》配套代码
Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for manuscript https://doi.org/10.1016/j.cell.2017.09.028 See also http://www.ioexplorer.org for interactive visuallization
Cardiac Metabolic Reprogramming Analysis of ToF
Circular visualization in R
Make Complex Heatmaps
R script for the covid balf data analysis
UBC9 promotes KRAS mutation colorectal cancer development through the activation of TGF-beta signaling
Deep neural networks for predicting CpG methylation
DCC/DAC methylation pipeline source
DNA methylation analysis notes from Ming Tang
make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.
This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representing a mixture of such cell-types. Inference proceeds via one of 3 methods (Robust Partial Correlations-RPC, Cibersort (CBS), Constrained Projection (CP)), as determined by user.
Bioconductor package: An Easy-to-use Systematic pipeline for ATACseq data analysis
Feature Selection in R using glmnet-lasso, xgboost and ranger
R package glmnet for estimating lasso and elastic net
Gene set enrichment data structures and methods
Genomic plot in trellis layout
my first R package just for testing
From IDAT to beta.
R code for the Illumina preprocessing and QC module for ArrayAnalysis.org
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.