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SQL Speedup about massdash HOT 3 CLOSED

roestlab avatar roestlab commented on July 18, 2024
SQL Speedup

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Comments (3)

jcharkow avatar jcharkow commented on July 18, 2024 1

Sounds good I can look into this

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singjc avatar singjc commented on July 18, 2024
  1. Load full table of IDs and protein accession, peptide sequence and precursor charge state from TransitionPQPLoader::getTransitionList -> SpectralLibraryLoader::load -> ExtractedIonChromatogramAnalysisServer::get_transition_list
  2. Use lookup table from 1. to get IDs to get meta information from getPeptideTransitionInfoShort instead of querying using peptide sequence and charge state

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singjc avatar singjc commented on July 18, 2024

Addressed with #49

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