Missing Packages during install about massdash

[singjc]

This seems to be an issue on Windows ubuntu subsystem as well. It seems PyMSNumpress requires Cython to be installed prior to installing dependencies in the setup.py

$ pip install -e . Obtaining file:///mnt/f/Users/JustinS/github/massseer Preparing metadata (setup.py) ... done 
Collecting Click (from MassSeer==0.1.0a0) Using cached click-8.1.7-py3-none-any.whl.metadata (3.0 kB) 
Collecting streamlit (from MassSeer==0.1.0a0) Using cached streamlit-1.28.1-py2.py3-none-any.whl.metadata (8.1 kB) 
Collecting numpy>=1.9.0 (from MassSeer==0.1.0a0) Using cached numpy-1.26.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) 
Collecting pandas>=0.17 (from MassSeer==0.1.0a0) 
Using cached pandas-2.1.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (18 kB) 
Collecting cython==0.29.32 (from MassSeer==0.1.0a0) 
Using cached Cython-0.29.32-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (2.0 MB) 
Collecting scipy (from MassSeer==0.1.0a0) 
Using cached scipy-1.11.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) 
Collecting pyopenms (from MassSeer==0.1.0a0)
Using cached pyopenms-3.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.9 kB) 
Collecting PyMSNumpress==0.2.2 (from MassSeer==0.1.0a0) 
Using cached PyMSNumpress-0.2.2.tar.gz (32 kB) 
Preparing metadata (setup.py) ... error 
error: subprocess-exited-with-error × python setup.py egg_info did not run successfully. │ exit code: 1 ╰─> [6 lines of output] 
Traceback (most recent call last): File "<string>", line 2, in <module> File "<pip-setuptools-caller>", line 34, in <module> File "/tmp/pip-install-5zplh61s/pymsnumpress_3ad6d8756c1944d389c4da6ebbf42a6d/setup.py", line 34, in <module> from Cython.Distutils import build_ext 
ModuleNotFoundError: No module named 'Cython' [end of output] note: This error originates from a subprocess, and is likely not a problem with pip. error: metadata-generation-failed × Encountered error while generating package metadata. ╰─> See above for output. note: This is an issue with the package mentioned above, not pip. hint: See above for details.

I think to resolve this, we might have to try just switch over to using MSNumpress packaged with pyopenms.