robinmeyers Goto Github PK

4cpipeline

atac-encode-snakemake

Snakemake pipeline to automate running multiple samples through the ENCODE ATAC-seq workflow

chrombpnet

Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)

chrombpnet-lite-snakemake

cutnrun-snakemake

genetics-l2g-scoring

Locus-to-gene scoring pipeline

genetics-v2g-data

Workflows to generate cis-regulatory datasets used for variant-to-gene (V2G) assignment in Open Targets Genetics

groseqpipeline

ir_black-osx

A black OS X Terminal theme that is actually readable (by Todd Werth) (Files for Mac OS 10.7+)

motifbreakr

A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.

mpra-gwas-builder

mpranalyze

Analyse enhancer strength based on MPRA experiments.

ngs-test-data

A workflow for creating small NGS test data sets, useful for continuous integration.

nibor

niboR | Robin convenient R functions for analysis

pan-meyers-et-al

Code to reproduce analyses and figures from Pan, Meyers, et al.

rbpnet

rna-seq-star-deseq2

RNA-seq workflow using STAR and DESeq2

sample_app

shmpipeline

shmsanger

transloc_pipeline

Translocation Sequencing Pipeline (Alt Lab)

translocapp

translocwebinterface

umi-tools

Tools for handling Unique Molecular Identifiers in NGS data sets

xgboost

Large-scale and Distributed Gradient Boosting (GBDT, GBRT or GBM) Library, on single node, hadoop yarn and more.