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aneuploidy-gwas

Analysis code accompanying the paper "Common variants spanning PLK4 are associated with mitotic-origin aneuploidy in human embryos." Science. (2015).

aneuploidy_analysis

Analysis code accompanying the paper "Evidence of selection against complex mitotic-origin aneuploidy during preimplantation development." PLoS Genetics.

aneuploidy_scrnaseq

Detection of aneuploidy using scRNA-seq data from human embryos.

assess-assembly

Scripts to analyze the presence or absence of generic genomic features in a de novo assembly.

binder

jupyter notebooks for qbb2020

compass

Perl / R scripts to COMpare a DNA sequence ASSembly to a trusted reference sequence

dmel-longread-assembly

Analysis code accompanying the paper "Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements." PLoS One. (2014).

egillettii-rnaseq

Data and scripts accompanying 2014 Molecular Ecology paper: http://www.ncbi.nlm.nih.gov/pubmed/24237665

ibdmix

ms-introgression

A short program to find introgressed haplotypes in simulated ms (or macs) data.

neand_sqtl

Introgression of splice-altering variation from Neanderthals to modern humans.

neanderthal_ase

Analysis code accompanying the manuscript "Impacts of Neandertal-introgressed sequences on the landscape of human gene expression".

python-novice-inflammation

Programming with Python

qbb2019-answers

rmccoy7541.github.io

Origins of Aneuploidy Research Consortium

sqtlviztools

functions for sQTL visualisation

tripolar_mitosis

Data and code accompanying paper "Tripolar mitosis drives the association between maternal genotypes of PLK4 and aneuploidy in human preimplantation embryos"