Comments (2)
I had similar problems downloading microarray data. I downloaded the files from AHBA website and then unzipped the files into one specify file. I run "files = abagen.fetch_microarray(donors=['9861', '10021', '12876', '14380', '15496', '15697'], data_dir='xxx') "(XXX refers to the document address).
Hope this can help you.
from abagen.
Thanks for reporting the issue. We have received issues like this before but we haven't been able to reproduce it reliably. It might be related to network connection stability. In this case, we recommend downloading the files from ahba website directly and place them in the corresponding directory. Meanwhile, please feel free to provide more details to help debug this issue. Thank you!
from abagen.
Related Issues (20)
- Issue with relabel_gifti?
- Bug with tests/mouse/test_gene.py
- Strange sample numbers/`NaN` expression values returned when using text file-based masks/parcellation HOT 1
- How to get expression data based on Destrieux atlas
- There is a error while add parameter "--ibf_threshold 0.5" in command line HOT 1
- Error in running 3.1
- Question about normalization method before differential expressed gene (DEG) analysis.
- Update about using custom parcellation
- BUG Report: Something wrong with the sample assignment when using Brainnetome atlas
- BUG Report: Something wrong with the sample assignment when using Brainnetome atlas(abagen.get_samples_in_mask)
- BUG: TypeError: set_axis() got an unexpected keyword argument 'inplace' HOT 2
- How to get samples*gene matrix before samples merged in brain region ?
- how to save the expression file? HOT 4
- get_interpolated_map - Key error for certain genes
- Qustion about the hemisphere filter method in drop_mismatch_samples function (samples_.py L223)
- Fetching aborted when using abagen.get_expression_data HOT 3
- Question about using freesurfer .annot files HOT 3
- Question about atlas
- DataFrame.set_axis() got an unexpected keyword argument 'inplace' with pandas 2.1.2 HOT 12
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from abagen.