rjdkmr Goto Github PK
Name: Rajendra Kumar
Type: User
Bio: Full Stack Developer, Computational Biophysicist
Location: Cambridge
Name: Rajendra Kumar
Type: User
Bio: Full Stack Developer, Computational Biophysicist
Location: Cambridge
To analyze fluctuations in DNA or RNA structures in molecular dynamics trajectories.
This program can be used to extract coordinates from the GROMACS MD Trajectory and to create GROMACS MD Trajectory from coordinate data.
It calculates average minimum-distance matrix and other related matrices between two atom-groups from molecular dynamics trajectory (GROMACS, NAMD or AMBER).
To calculate the residues position along X, Y and Z axes using GROMACS MD trajectory
To calculate rotational/translational displacement of the DNA from GROMACS MD trajectory
Genome Contact Map Explorer - gcMapExplorer. Visit:
Features Based Conformational Clustering of MD trajectories. See details at:
To calculate channel radius using hole2 program for GROMACS MD trajectory
This program calculates mutual information and generalized correlation
WebGL protein viewer
For more details visit homepage:
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