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basic_neural_processing_modules

A bag of functions for data science

big_ugly_roi_tracker

BURT: A pipeline for tracking ROIs over sessions for calcium imaging

bmi_for_scanimage

Some simple code to run optical Brain Machine Interfacing experiments through ScanImage & Matlab.

bmi_idap

Brain-machine-interface InterDay Analysis Pipeline

bwain

Brain-machine-interfacing suite for 2-photon calcium imaging

course-content

Summer course content for Neuromatch Academy

face-rhythm

A pipeline for extracting and interpreting facial movements from video

gcamp_roi_classifier

simple CNN for classifying ROIs from 2p calcium imaging

harvard_cluster_helpers

Some helper scripts and notebooks for transferring files and requesting jobs on O2 and FASRC at Harvard

nbap

Neural-Behavior Analysis Pipeline

nma-project

ludicrous lobsters group alpha

roicat

Region Of Interest Classification and Tracking

roiextractors

Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.

rolling-variance

Simple code for efficient calculation of online updates to moving or running variance and mean using Welford's method.

rolling_percentile

Fast rolling percentile function for python

s2p_on_o2

a system for running suite2p on o2

secret_key_database

Store and encrypt keys. Simple Python library.

simclr

SimCLRv2 - Big Self-Supervised Models are Strong Semi-Supervised Learners

sparse_convolution

Sparse convolution in python

technical_interview_public

tensor_regression

Pytorch functions for performing tensor regression

torchinterp1d

1D interpolation for pytorch

vqt

Variable Q-Transform