rhysnewell Goto Github PK

annembed

data embedding based on approximate nearest neighbour

aviary

A hybrid assembly and MAG recovery pipeline (and more!)

bioconda-recipes

Conda recipes for the bioconda channel.

bird_tool_utils

Utility functions for the bird metagenomic toolkit

camisim

CAMISIM: Simulating metagenomes and microbial communities

chip-r

Assessing the reproducibility of proccessed ChIP-seq peaks

clonefinderapi

API for the Clone Finder application

coverm

Read coverage calculator for metagenomics

doctave

A batteries-included developer documentation site generator

drawio-diagrams

Diagrams for draw.io

fftconvolve

Rust implementations of Fast Fourier Transform convolution and correlation for n-dimensional arrays

finch-rs

A genomic minhashing implementation in Rust

flight

Python module handling calls to UMAP and HDBSCAN for Lorikeet and Rosella

ftms_mapper

FT-MS + metabolomics playground

galah

More scalable dereplication for metagenome assembled genomes

groningen-microbiome

Microbiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen

gtdb_genome_filter

Small script to parse and filter out genomes in the GTDB

helpful_scripts

Collection of file manipulation scripts

idr

IDR

kallisto_indexer

Collection of scripts for parsing multiple files to kallisto

kingfisher-download

Easier download/extract of FASTA/Q read data from the ENA, NCBI, AWS or GCP.

latex-paper-template

A starting point for a latex paper, with a bibtex sample and a Makefile.

lorikeet

Strain resolver for metagenomics

metawrap

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

notebooks

nymph

Non-Negative Matrix Factorization in Rust

personal_configs

A collection of personal config files for various scenrios (Shell, SSH, etc.)

phylowgs

Application for inferring subclonal composition and evolution from whole-genome sequencing data.

profile

hugo theme for github splash page

pyani

Python module for average nucleotide identity analyses