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achilles

Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a OMOP CDM database

athenian

atlas

ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

brl

cancertxpathway

A package to extract chemotherapy records for cancer patients. The chemotherapy records are instantiated as Episode / Episode Event table with corresponding regimen as episode source concept id. The package also portrait the treatment patterns for patients with cancer and onset timing of the adverse event, i.e., neutropenia.

capr

Cohort definition Application Programming in R

cohortdiagnostics

[Under development] An R package for performing various cohort diagnostics.

cohortmethod

An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.

commondatamodel

Definition and DDLs for the OMOP Common Data Model (CDM)

condensier

Non-parametric conditional density estimation with binned conditional histograms

corazon

covid-19

The OHDSI repository to provide comprehensive evidence for the covid-19

covid19characterizationcharybdis

Characterizing Health Associated Risks, and Your Baseline Disease In SARS-COV-2 (CHARYBDIS) - a study to describe the baseline demographic, clinical characteristics, treatments and outcomes of interest among individuals tested for SARS-CoV-2 and/or diagnosed with COVID-19 compared to Influenza patients from 2017-2018

covid19vaccineaesiincidencecharacterization

Calculating the background rates of adverse events of special interest (AESI) for the COVID vaccines

criteria2query

[In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed against OMOP CDM

cv

My CV

delayed

Dependent delayed computation for R

doacswarfarinsub

This study evaluated the comparative risk of severe uterine bleeding for rivaroxaban, apixaban, dabigatran, and warfarin therapies among propensity score-matched patients with non-valvular atrial fibrillation and venous thromboembolism in routine clinical practice.

drat

drat repository for OHDSI R packages

endometriosis-phenotype-characterization

This is the repository for the Endometriosis Phenotype Characterization

era-constructor

This is a repo that contains standardized code for hte construction of Drug Eras, Dose Eras and Condition Eras

gridisl

Discrete SuperLearner with Grid-Search for Longitudinal Data

hierarchicaltmle

R code to generate simulated data and implement the hierarchical TMLEs described in "A new approach to hierarchical data analysis: Targeted maximum likelihood estimation for the causal effect of a cluster-level exposure", Balzer et al. SMMR 2018.

incidenceprevalence

Estimating incidence and prevalence with the OMOP CDM

lmtp

:package: Non-parametric Causal Effects of Feasible Interventions Based on Modified Treatment Policies :crystal_ball:

lreccompare

Comparison of Double Robust Methods with Positivity Violations (R-package)

ltatstructur

medltmle

R/medltmle: Estimation and Inference for Natural Mediation Effect in Longitudinal Data

medoutcon

:package: R/medoutcon: Efficient Causal Mediation Analysis with Intermediate Confounders

mimic-code

MIMIC Code Repository: Code shared by the research community for the MIMIC-III database