resurgo-genetics Goto Github PK

000_algorithm_zoo

2.rna_structure_profile

3dchromatin_replicateqc

Software to compute reproducibility and quality scores for Hi-C data

adage-deploy

Scripts to automate deployment of an adage-server instance

aether

Intelligent and cost-effective bidding on cloud computing instances for bioinformatics pipelines.

allennlp

An open-source NLP research library, built on PyTorch.

anchor

:anchor: Find bimodal, unimodal, and multimodal features in your data

api-standards

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2017

arae

Code for the paper "Adversarially Regularized Autoencoders for Generating Discrete Structures" by Zhao, Kim, Zhang, Rush and LeCun

argparse2tool

transparently build CWL and Galaxy XML tool definitions for any script that uses argparse

artificial-intelligence-deep-learning-machine-learning-tutorials

A comprehensive list of Deep Learning / Artificial Intelligence and Machine Learning tutorials - originally created by Donne Martin and will be expanded in areas of AI/Deep Learning / Machine Vision and industry specific areas such as Automotives, Retail, Pharma, Medicine, Healthcare by Tarry Singh until atleast 2020 until he finishes his Ph.D. (which might end up being inter-stellar cosmic networks! Who knows! 😀)

arvados

An open source platform for managing and analyzing biomedical big data

arvados-ansible

Deploy arvados components using ansible

arvados-cli

arvados-clients

Useful client tools for Arvados

arvados-dev

Development tools for people who hack on arvados core

arvados-pipelines

HGI arvados pipelines (crunch scripts, container Dockerfiles, pipeline templates, etc)

arvados-pipelines-1

arvados-tools

Small tools for working with arvados

arvados-tools-1

Tools to help users with pipelines

arvados_trial

Pilot test for using the Arvados system to create new MGI cancer pipelines.

arvados_trial_wiki

A full featured, including pull requests, git repo for the arvados_trial Wiki

arvgo

Go SDK for Arvados APIs.

atac-1

Code and documentation for analysis of ATAC-seq data

atac-seq-analysis

Some scripts for ATAC-seq data analysis

atac_dnase_pipelines

ATAC-seq and DNase-seq processing pipeline

atac_peak

Deep learning framework to predict TF binding from DNA-sequence and ATAC-seq signals.

atacflow

Analysis pipeline for ATACseq data using Nextflow

atacseqcshl

ATAC-seq Tutorial CSHL