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cdsknn

Large-scale single-cell clustering algorithm based on K-means and optimal KNN graph structure

mgpfact.jl

Trajectory inference method. It can decompose complex cell trajectories into interpretable transcriptional branching Gaussian processes.

mgpfactr

A model-based, unsupervised manifold learning method that factors complex cellular trajectories into interpretable bifurcating Gaussian processes of transcription.

murp

A model-based downsampling algorithm for single-cell

renjun0324

ripseq-analysis-workflow

Summarized existing analysis methods for RIP-seq, including alignment, peak calling, and annotation.

ti_dbcti

A docker container for dbcti, mainly for cell trajectory inference analysis of single cell RNA-seq data

ti_mgpfact

The Docker container for MGPfact is primarily used for unsupervised manifold learning of single-cell RNA-seq data and can factorize complex cell trajectories into interpretable branching Gaussian processes.

ti_scfates_tree

A docker container for scFates, mainly for cell trajectory inference analysis of single cell RNA-seq data