reillyowencooper Goto Github PK

ab-targeting-daphnia

Targeted manipulation of abundant and rare taxa in the Daphnia magna microbiota with antibiotics impacts host fitness differentially. Reilly O. Cooper, Janna M. Vavra, Clayton E. Cressler.

agnostos-wf

anvio

An analysis and visualization platform for 'omics data

bioutils

A collection of Python code that I use more often than not

circadian_microbiome

This project contains code for: Pfenning-Butterworth A.C, Cooper R.O., and Cressler C.E. Diel rhythm influences microbiota composition in two zooplankton species.

daphnia_magna_metagenome

All scripts used for data analysis and visualization in "Characterization of core bacterial species in the Daphnia magna microbiota using shotgun metagenomics".

daphnia_multigenerational_antibiotics

Multiple generations of antibiotic exposure and isolation influence host fitness and the microbiome in a model zooplankton species. Cooper RO, Tjards S, Hotovy J, Nguyen DT, Cressler CE.

magweaver

patientriskassessment

A patient risk assessment iOS application as part of the Hack:Now hackathon competition

pyani

Python module for average nucleotide identity analyses