rcedgar Goto Github PK
Name: Robert Edgar
Type: User
Name: Robert Edgar
Type: User
Protein multiple sequence alignment benchmark
Clustering and alignment for circular sequences
Parse infernal cmscan tbl file to find pairs of hits to same model on different strands
Accelerated BLAST compatible local sequence aligner.
C++ class for Dirichlet distributed random variables
A collection of useful .gitignore templates
A C++ Hello World project, using CMake, and GitHub Actions
Generate "Jupiter" plots for circular genomes
Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.
Manipulate and generate figures for trees in Newick format
Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences
Database of virus RdRP barcode sequences
Python script to calculate LDDT and DALI Z score from MSA plus structures
Compares a multiple alignment with a reference and reports accuracy scores.
Code, data and results for Muscle5 ensemble experiments on RdRp genus and phylum trees
Robert C. Edgar's C++ coding style
RE-implementation of TD-Gammon
Implementation of NOMAD (https://doi.org/10.1101/2022.06.24.497555)
Protein structure alignment and search algorithm
Python Newick tree format parser and Robinson-Foulds calculator (self-teaching exercise)
Code for identifying candidate ribozyviria sequences
A simple paired-read simulator in stand-alone Python2
Python script to identify circular contigs from SPAdes assembler.
Validation of sycnmers compared to minimizers
Data and scripts to reproduce my analysis of Tara Oceans data
A repository for storing code and data related to a systematic comparison of short read taxonomy assignment tools
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.