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b2-bayesian-for-biology

Tutorial and starter codes for Bayesian inference used in computational Biology

doe-onestep

Design of experiment to minimize number of observation needed for Bayesian Inference

gobi-scope

Generalized ODE based inference on SCOPE in silico or in situ time series datasets

image-processing

this repository has the contents to create various image filters using simple python code and matrices.

labview-optical-tweezer

labview program build around kinesis thorlabs for Optical Tweezer remote control and data acquisition

learnentropy

This code estimates the entropy production rate by machine learning of trajectory data. The method is based on the thermodynamic uncertainty relation.

llmtime-dynamics

Experimenting on dynamical systems

mcmcstat

DRAM MCMC toolbox for Matlab

metapop_lung

(Review) Repository for the metapopulation model of a P.a. lung infection

particle-tracking-software

To track the motion of a bacteria or see how it is changing its shape

phamily

A large scale latent variable compartmental model for simulating abundance/population time series of interacting phages and microbes that undergoes lysis in presence of the phages.

pythonoop_tutorial

The Original Code repository for my Python OOP Series

scope-causation-network

Under the Simons Collaboration on Ocean Processes and Ecology, creating causation networks to understand how biotic and abiotic components interact spatio-temporally

stochastic_driven_colloid

time-series-iterative-

Find parameters of Langevin equation with out noise, with noise, in water, in complex fluids, using ML and iterative algorithms

vimimo-virus-microbe-modeller

Create, test and deploy virus-microbe interaction models for community experiments and population time series