Name: Ram Sai Nanduri
Type: User
Company: @Clinical-Genomics-Lund, Lund Hospital, Region Skane
Bio: A young bioinformatician with a DNA for automation and a passion for crafting pipelines using shell, python, R, R Markdown, Nextflow, and Snakemake.
Location: Sweden
Blog: https://www.linkein.com/in/ramsainanduri
Ram Sai Nanduri's Projects
Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
:book: For those who wanna learn Bash
Basic tetris is written in python and developed as a fun project
Conda recipes for the bioconda channel.
:microscope: Path to a free self-taught education in Bioinformatics!
repository for student workshop pages
A list of useful bioinformatics resources
Official home of genome aligner based upon notion of Cactus graphs
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
GC content Calculator
Protein Graph Library
GROWeb is a user-friendly and accessible Flask application that brings the power of GROMACS simulations to the web. It allows users to design and execute molecular dynamics simulations, analyze simulation data, and visualize complex biomolecular systems in real-time.
Merging, Annotation, Validation, and Illustration of Structural variants
Repository to host tool-specific module files for the Nextflow DSL2 community!
Anlysis of pharmacogenomic targets from Genomic Medicine Swedens heamatology panel.
This repo generates automatic documentation for pipelines or tools by using a pipeline.yaml file and producing both HTML and MD documents. The MD document can be uploaded to a readthedocs server for online documentation. It uses the mkdocs format, with the required "docs" folder and related files in the project root folder.
Split multi fasta file into single fasta files
Strelka2 germline and somatic small variant caller
Subset Multi Fasta
Test data to be used for automated testing with the nf-core pipelines
Transcript Segment Library Construction for RNA-Seq Quantification