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camcan-dmri-study

dipy

Diffusion MR Imaging in Python

dipy-dki-paper

dipy_workshop

This repository contains the tutorials for the DIPY workshop

dipy_workshop_2021

dipy_workshop_2022

disimpy

Massively parallel Monte Carlo diffusion MR simulator written in Python

dki_svoxel_examples

In this repo, I will generate diffusion-weighted signals of some simple single voxels to process DTI and DKI measures.

dwi_pca_denoising

In this repository, I am sharing the PCA denoising code implemented for my PhD thesis.

free-water-dki

free-water-elimination-dti

Reproduce the artice Hoy et al. 2014 Optimization of a free water elimination two-compartment model for diffusion tensor imaging. Neuroimage 103:323-33. doi: 10.1016/j.neuroimage.2014.09.053

fwedti_ssvsms

In this repository, I am sharing some code comparing the accuracy/precision of single-shell and multi-shell free water elimination DTI using synthetic signals.

gibbs-removal

In this repository, I am sharing an algorithm to suppress Gibbs artefact.

hybrid-pca

In this repository, I am showing how one can run the Hybrid PCA denoising. I also included the code to generate all figures of my presentation for the ESMRMB-ISMRM joint annual meeting.

pcadenoising

In this repository I am sharing all the code used for my following study:

pyafq

Automated Fiber Quantification ... in Python

pybrain_dipy

Two days dipy workshop

radial_tensor_kurtosis

reproducing-veraart2013

rescience-submission

ReScience submission repository