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3krg-hap

Haplotype marker based on 3,000 Rice Genomes for subpopulation inference

abhgenotyper

The ABHgenotypeR R package to easily visualize and manipulate ABH genotypes

ad_px_pipe

Pipeline for performing GWAS and PrediXcan in admixed populations, finding independently associated and eQTL colocalized signals, and mapping admixture using local ancestry estimations

african_rice

hosting scripts for the analysis of whole-genome resequencing data on african rice

ampril-genomes

scripts for the project of seven thaliana genomes assembly

ampril-gi

The scripts used in the project "The evolutionary dynamics of genetic incompatibilities introduced by duplicated genes in Arabidopsis thaliana"

apeinversion_paper

A set of supplementary files for the study: "Recurrent inversion toggling and great ape genome evolution".

assemblytics

Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference genome.

awesome-genetics-software

A list of cool software for genetic analysis and the like

awesome-nextflow

A curated list of nextflow based pipelines

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

badmixture

R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes

baidupcs-go

百度网盘客户端 - Go语言编写

beagle_imputation

Pipeline for running imputation on Beagle.

bgdata

A Suite of Packages for Analysis of Big Genomic Data

bglr-r

bgwas

R package to perform Bayesian Genome-Wide Association Studies

biblatex-ext

Extensions for the biblatex standard styles

bio_tools

Useful bioinformatic scripts

bioanno

Build Annotation package by using information from KEGG, NCBI, Ensembl

biocluster

Tutorial on building a computing cluster for bioinformatics

biohpc_snp_calling

From fastq to vcf, using Trimmomatic, bwa mem, and GATK tools.

bioinformatic-resources

bioinformatic-utils

Script to perform various bioinformatics operations

bioinformatics-skills

生物信息学技能提升，专注于工具使用与编程

blink

BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions

bovine-graphs

Integrate multiple genome assemblies into a pangenome graph

brm

Block Regression Mapping (BRM) is a statistical method for QTL mapping based on bulked segregant analysis by deep sequencing

broad-prod-wgs-germline-snps-indels

Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://github.com/gatk-workflows/five-dollar-genome-analysis-pipeline

bsa

Bulked-Segregant Analysis using vcf file with or without parents