David Balkcom's Projects
Bias and Fairness Audit Toolkit
SODA API is an open source implementation of SODA API Standards for Data and Storage Management.
Manual Atlas.ti 7
An awesome list of high-quality open datasets in public domains (on-going).
An exhaustive reference to problems seen in real-world data along with suggestions on how to resolve them.
Balancing weights for observational studies
Source code for 'The Biml Book' by Andy Leonard, Scott Currie, Jacob Alley, Martin Andersson, Peter Avenant, Bill Fellows, Simon Peck, Reeves Smith, Raymond Sondak, Benjamin Weissman, and Cathrine Wilhelmsen
Bulk Data Implementation Guide
HL7 CDS Hooks website
Clinical Quality Language (CQL) is an HL7 specification for the expression of clinical knowledge that can be used within both the Clinical Decision Support (CDS) and Clinical Quality Measurement (CQM) domains. This repository contains complementary tooling in support of that specification.
An R package for performing various cohort diagnostics.
Definition and DDLs for the OMOP Common Data Model (CDM)
Prototype Neo4j Knowledge Graph for Coronavirus outbreaks
🦠 A simple and fast (< 200ms) API for tracking the global coronavirus (COVID-19, SARS-CoV-2) outbreak. It's written in python using the 🍼 Flask framework. Supports multiple sources!
Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE
Community effort to build a Neo4j Knowledge Graph (KG) that links heterogeneous data about COVID-19
Covid19 Geomapping (on FHIR)
Load COVID19 incident tracking data into Neo4j - source is JHU data
CQL Measure Processing Component
Tooling for CQL and IG Authors
A collaborative workspace for the development of CQL formatting conventions and usage patterns for artifact development. The home of Cooking with CQL Examples, visit the wiki for more.
Runs CQL phenotype definitions against an OMOP repository
Coverage Requirements Discovery (CRD) Reference Implementation (RI)
Graphical analysis of structural causal models / graphical causal models.
Hospital Quality of Care Scores Association with Clinical Outcomes in MIDAS. Authors: Georgia Barbayannis, Davit Sargsyan, I-ming Chiu, Noah Michel
Preparing 5 quarters of statewide HIV drug-utilization data for PHI-free demo
An R package for connecting to databases using JDBC.