what's the definition of model or contents of model? about igor

[qmarcou]

Dear @decenwang ,
I am not sure I understand the sense of both your questions.

I invite you to have another read at the documentation: the alignment step is a pre-processing step that enables secondly to run the inference and learn a recombination model.

As for the "index", I would again need a bit more context as there are many indices involved operations since the generic name 'index' is used in programming to denote a non negative integer designating position on an array/string/etc.

[decenwang]

Dear @decenwang ,
I am not sure I understand the sense of both your questions.

I invite you to have another read at the documentation: the alignment step is a pre-processing step that enables secondly to run the inference and learn a recombination model.

As for the "index", I would again need a bit more context as there are many indices involved operations since the generic na/detailme 'index' is used in programming to denote a non negative integer designating position on an array/string/etc.

Hi Quentin,

Sorry for loads of troubles for you.
I mean, within the three modes: learning, analysis, generation, in your article, you said: In the learning mode, IGoR infers a recombination statistics of large data sets of sequences ......., I would like to know what is the meaning/details of the recombination statistics?
for the second, Now I got it. thanks a lot!
Anyway, this is my last question.

Best,

Decen