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chromvar

chromatin Variability Across Regions (of the genome!)

d2l-en

Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 500 universities from 70 countries including Stanford, MIT, Harvard, and Cambridge.

evo

DNA foundation modeling from molecular to genome scale

gchromvar

Cell type specific enrichments using finemapped variants and quantitative epigenetic data

gpt-2

Code for the paper "Language Models are Unsupervised Multitask Learners"

gwas_catalog

respiratory genetic correlation analysis

polyfun

PolyFun (POLYgenic FUNctionally-informed fine-mapping)

scavenge

SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.

scgpt

simer

Data Simulation for Life Science and Breeding

tosica

Transformer for One-Stop Interpretable Cell-type Annotation

ukbb_pan_ancestry

Analyses conducting GWAS across the UKBB diverse superpopulations

ukbb_parser

ukbrest

ukbREST: efficient and streamlined data access for reproducible research of large biobanks