Comments (4)
WackerO
commented on August 16, 2024
Will add a param so that users can choose between clustering and no clustering. Also remove the ENSEMBL column
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LaurenceKuhl
commented on August 16, 2024
Hi on top of that, could we keep samples only pertaining to the contrast ? Here all samples are always shown, eventhough they have nothing to do with the contrast requested
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qbicStefanC
commented on August 16, 2024
After talking to @WackerO we will move the request to filter for samples being present in the contrasts analyzed only to a new feature request and work on it in the next release phase.
Thanks
Stefan
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WackerO
commented on August 16, 2024
Original issue solved in #229, closing this in favor of #230 about the second issue.
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Related Issues (20)
- Do another lookover of code and docu HOT 4
- Fix volcano and enrichmeht plot layout HOT 1
- Do a template update HOT 1
- The destination path is too long error on windows HOT 1
- Rename the parameter --skip_pathway_analysis to --run_pathway_analysis and have the default set to 'false' HOT 1
- Contrast that is not included in design throws error
- Remove `multiqc` and `software_versions.yml` from rnadeseq report HOT 3
- Volcano plots and PCA plot don't have correct x and y axis dimensions HOT 1
- Legend is cutoff for enriched pathway plots HOT 1
- Double-colored bar in enrichment plot, some slashes missing HOT 1
- Unreadable heatmap ticks HOT 1
- star salmon doesn't output round values HOT 2
- ## Enriched pathways not displayed properly HOT 1
- Include background gene list for pathway analysis HOT 1
- If no enriched pathway is found, it simply states so instead of throwing an error HOT 1
- Genes without 'gene_name' wont be shown in Volcano plot HOT 3
- Use --relevel parameter for PCA plotting HOT 1
- Save pipeline info to zip HOT 1
- Reduce pathway heatmaps to relevant samples
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