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100-days-of-ml-code

100-Days-Of-ML-Code中文版

100days-ml-code

100天机器学习 （翻译+ 实操）

awesome-nanopore

A curated list of awesome nanopore analysis tools.

clair3

Clair3 - Integrating pileup and full-alignment for high-performance long-read variant calling

deepsignal

Detecting methylation using signal-level features from Nanopore sequencing reads

dena

Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.

dena-deal

Data processing of DENA prediction.

epinano

Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads

juncbase

Junction Based Analysis of Splicing Events for RNA-Seq

kmer_models

Predictive kmer models for development use

longgf

A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing

medaka

Sequence correction provided by ONT Research

methplotlib

Plotting tools for nanopore methylation data

miso

MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation

nanocompore

RNA modifications detection from Nanopore dRNA-Seq data

nanopore-scripts

Various scripts and recipes for working with nanopore data

nanosplicer

paddlehelix

Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集

regtools

Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.

rfdiffusion

Code for running RFdiffusion

sg-nex-data

Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

tombo

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.