psy-fer Goto Github PK

ahk_stuff

Random stuff

apprtc

The video chat demo app based on WebRTC

azure-nextflow

bioinf_tools

Quick and dirty scripts used in my bioinformatics adventures

blue-crab

crab go snap snap

bonito

A PyTorch Basecaller for Oxford Nanopore Reads

buttery-eel

The buttery eel - a slow5 guppy/dorado basecaller wrapper

covarplot

CoVarPlot - Covarage Variant Plots for viral whole genome sequencing

deepbinner

a signal-level demultiplexer for Oxford Nanopore reads

deeplexicon

Signal based nanopore RNA demultiplexing with convolutional neural networks

deepsimulator_benchmark

The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.

fast5_fetcher

A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing efficiency

folder-structure-conventions

Folder / directory structure options and naming conventions for software projects

github-cheat-sheet

A list of cool features of Git and GitHub.

hive-seq

HIVepsilon-seq - scalable characterisation of intact persistent proviral HIV reservoirs in women

interartic

InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..

misc

Various scripts and how-to's related to bioinformatics, genomics, and nanopore sequencing

nanopore_formats

A place to track nanopore formats

nanopore_ncm18

Helpful scripts for working with Oxford Nanopore Sequencing data

ont_barcoding

porechop

adapter trimmer for Oxford Nanopore reads

psy-fer

pysigfish

sigfish python tools

radian

Nanopore direct RNA basecaller

read_until_api

Read Until client library for Nanopore Sequencing

readfish

Read Until scripts

rodan

A fully convolutional architecture for basecalling nanopore RNA sequencing data

sars-cov-2_gtg

Genomic Tech's COVID sequencing

seq_spot

some vis of seq data

speech2textandback