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napari_scripts

Collection of useful (to me) python scripts for interacting with napari

npe2

npe2-feedstock

A conda-smithy repository for npe2.

numcodecs

A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.

numpy

The fundamental package for scientific computing with Python.

numpy.org

The NumPy home page

ome-zarr-py

Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

omero-cli-transfer

An OMERO CLI plugin for creating transfer packets between OMERO servers.

pamba

picasso

Development of PICASSO plugin for napari

platymatch

Accepted at BioImage Computing Workshop in ECCV, 2020

pol-bioimage-analysis-ts-gpu-accelerated-image-analysis

PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track

pygments

Pygments is a generic syntax highlighter written in Python

pyopencl

OpenCL integration for Python, plus shiny features

pyopencl-in-action

A work in progress to implement the code from OpenCL in Action by Matthew Scarpino in pyopencl

qtconsole

Jupyter Qt Console

qtpy

Provides an uniform layer to support PyQt5, PySide2, PyQt6, PySide6 with a single codebase

quanfima

Quanfima (Quantitative Analysis of Fibrous Materials)

qupath-extension-cellpose

an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.

redlionfish-feedstock

A conda-smithy repository for redlionfish.

rit-imageanalysis-containers

Making it easier for users to spin up a Singularity container with image analysis tools from a slurm-based cluster

scikit-image

Image processing in Python

scipy2024-tutorial

Image analysis and visualization in Python with scikit-image, napari, and friends @ Scipy 2024

sem_fiber_analysis

SEM image analysis to get fiber parameters (diameter, orientation)

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

stardist

StarDist - Object Detection with Star-convex Shapes

stardist-napari

StarDist plugin for napari

superqt

Missing widgets and components for Qt-python

tox-min-req

Tox plugin for minimal requirements tests

vispy

Main repository for Vispy