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blobs-counts

Script calculate the amount of sperm cells present in one sample. It can be used for analysis of dead and live ratios for sperm cells. Data are supposed to come from spinning disk microscope.

cancer-genomics-data-analysis

Cancer Genomics Data Analysis exercise for the course Analytical Methods in Cancer Genomics 2023. The goal of the exercise is to generate a read-depth plot for human cancer sample.

chemotaxis-simulation

chromatin-volume-analysis

The project aims to perform semantic segmentation of chromatin subtypes in nuclei, discriminating chromocenters, perinuclear, perinucleolar, and nucleoplasmatic chromatin. The result is to be used for volume analysis.

colocalization-analysis

This is a function created for biological analysis of colocalizing signals in microscopy.

differential-gene-expression-analysis

Differential gene expression analysis exercise for the course Analytical Methods in Cancer Genomics 2023. The goal is to perform analysis of RNA-Seq data.

etrachallenge_ics_solution

This repository contains Python code for analyzing saccade patterns using eye tracking data.

ikv2-final-project

Analysis of the neural simulation data from NEST Simulator. The following analysis is part of solution for the semestral project for Informatics and Cognitive Science II from Faculty of Math and Physics of Charles University in Prague.

nmai059-2022

sars-cov-2-lineage-determination

Sars-CoV-2 Lineage Determination exercise for the course Analytical Methods in Cancer Genomics 2023

thesis-2023-travelling-waves

A thesis project conducted in 2022/2023 at the Computational Systems Neuroscience Group (CSNG) of Charles University's Faculty of Mathematics and Physics. The project aims to study relationships between ECoG and electrode signals in the visual cortex of cats.

viral_particles_distribution_in_nucleus

In this project the goal is to measure distance of all protein particles from lamin signal, show if there can be any possible interaction between these particles and lamin.