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3dmodel_scripts

This repository contains the custom scripts used in the automated workflows hosted on the NIH 3D Print Exchange (3dprint.nih.gov).

abnumber

Convenience Python APIs for antibody numbering using ANARCI

anarci-pyhmmer-fork

Antibody Numbering and Antigen Receptor ClassIfication

antismash

antiSMASH

bgc-pipeline

bgc-pipeline-1

caravel

Caravel is a data exploration platform designed to be visual, intuitive, and interactive

conda

Specifying a conda environment with `environment.yml`

dvc

Data Science Version Control - Git for data scientists

fairseq

Facebook AI Research Sequence-to-Sequence Toolkit written in Python.

fit-ppr-hamilton

golem

Open-source chatbot framework for python developers. Batteries included 🔋🔋

golem-example

Example chatbot using golem dialog manager

hmmlearn

Hidden Markov Models in Python, with scikit-learn like API

immunebuilder-fork

Predict the structure of immune receptor proteins

jupyterlab

Demonstrating how to get JupyterLab working with Binder

machine-learning-for-proteins

Listing of papers about machine learning for proteins.

marshmallow_dataclass

Automatic generation of marshmallow schemas from dataclasses.

maskedproteinent-fork

mi-spi-szz

Studentské neoficiální shrnutí látky MI-SPI k SZZ 2017.

miniwdl

A static analysis toolkit for the Workflow Description Language

mlprague2019

mongoengine-migrate

Migrations for MongoEngine inspired by Django

mrnaid-fork

mutation_maker

Application for mutagenic primer design. Facilitates development of biocatalysts (Green Chemistry) and new therapeutic proteins.

nightingale

Data visualisation web components for the life sciences.

notebooks

Various jupyter notebooks

osprey-binder

paa

portfolio

Personal portfolio and tests