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Hello there! 👋

I'm a research software engineer based in London, building tools to prepare for the next pandemic.

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💼 I work at the Centre for the Mathematical Modelling of Infectious Diseases, at the London School of Hygiene and Tropical Medicine, and in the Epiverse Initiative at Data.org.

Previously a field ecologist, I worked with spatial trajectory data and individual based simulation models for my PhD in ecology and evolution.

A Guide and Tools for Cleaning High-throughput Animal Tracking Data

https://besjournals.onlinelibrary.wiley.com/doi/10.1111/1365-2656.13610 https://github.com/pratikunterwegs/atlastools

Mechanistic Individual Based Simulations

Evolutionary, individual-based models of animal movement, and especially the co-evolution of animal movement and competition strategies.

kleptomove ms pathomove

Massive Citizen Science Data

eBird Occupancy Modelling

Pratik Gupte's Projects

aggremove icon aggremove

Source code for a toy model of multi-species aggregation.

atlastools icon atlastools

Tools for pre-processing high-throughput animal tracking data.

data_pipelines icon data_pipelines

A collection of outbreak analytics pipelines using different infrastructures for automation.

elemove icon elemove

Source code for an entry to the BES mapping animal movements contest.

elephanttempkruger icon elephanttempkruger

Source code for Thaker, Gupte et. al (2019), on analysis of elephant movement in relation to temperature.

embarcadero icon embarcadero

🌲🌉 Species distribution models with Bayesian additive regression trees

endemicr icon endemicr

Check whether a species is endemic to an area.

epichains icon epichains

Methods for simulating and analysing the sizes and lengths of infectious disease transmission chains from branching process models

epidemics.jl icon epidemics.jl

Julia package to model epidemic scenarios; a translation of the R(cpp) package {epidemics}.

epiparameter icon epiparameter

R package with epidemiological parameters for infectious diseases

epishiny icon epishiny

Tools for interactive visualisation of epidemiological linelist data

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